Percolator
Publications
Percolator was firstly published in
Lukas Käll, Jesse Canterbury, Jason Weston, William Stafford Noble and Michael J. MacCoss.
Semi-supervised learning for peptide identification from shotgun proteomics datasets
Nature Methods 4:923 – 925, November 2007
Pecolator’s q-value calculation method is described in
Lukas Käll, John D. Storey, Michael J. MacCoss and William Stafford Noble
Assigning confidence measures to peptides identified by tandem mass spectrometry
Journal of Proteome Research, 7(1):29-34, January 2008
and percolator’s posterior error probability calculation method is described in
Lukas Käll, John D. Storey and William Stafford Noble
Nonparametric estimation of posterior error probabilities associated with peptides identified
by tandem mass spectrometry
Bioinformatics, 24(16):i42-i48, August 2008